In all the cases for me is sufficient to backup the folder which host the volume for persistent data of each container. I typically do not care to stop and reload containers but nothing prevents you to do so in the backup script. Indeed if a database is concerned the best way is to create a dump and backup that one file. Considering tools, Borg and restic are both great. I am moving progressively from Borg to restic+rclone to exploit free cloud services.